Plant Small RNA World Growing Bigger: tRNA-Derived Fragments, Longstanding Players in Regulatory Processes
نویسندگان
چکیده
In the past 2 decades, discovery of a new class small RNAs, known as tRNA-derived fragments (tRFs), shed light on layer regulation implicated in many biological processes. tRFs originate from mature tRNAs and are classified according to tRNA regions that they derive from, namely 3′tRF, 5′tRF, tRF-halves. Additionally, another tRF subgroup deriving precursors has been reported, 3′U tRFs. length ranges 17 26 nt for 3′and 5′tRFs, 30 40 biogenesis is still not yet elucidated, although there strong evidence Dicer (and DICER-LIKE) proteins, well other RNases such Angiogenin mammal RNS proteins family plants, responsible processing specific abundance those molecules varies among tissues, developmental stages, environmental conditions. More recently, several studies have contributed elucidate role these intriguing may play all organisms. Among recent discoveries, were found be involved distinctive regulatory layers, transcription translation regulation, RNA degradation, ribosome biogenesis, stress response, signaling plant nodulation, genome protection against transposable elements. Although biology poorly understood, field blossomed few years, this review summarizes most developments plants.
منابع مشابه
tRNA-Derived Fragments Target the Ribosome and Function as Regulatory Non-Coding RNA in Haloferax volcanii
Nonprotein coding RNA (ncRNA) molecules have been recognized recently as major contributors to regulatory networks in controlling gene expression in a highly efficient manner. These RNAs either originate from their individual transcription units or are processing products from longer precursor RNAs. For example, tRNA-derived fragments (tRFs) have been identified in all domains of life and repre...
متن کاملtRF2Cancer: A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers
tRNA-derived small RNA fragments (tRFs) are one class of small non-coding RNAs derived from transfer RNAs (tRNAs). tRFs play important roles in cellular processes and are involved in multiple cancers. High-throughput small RNA (sRNA) sequencing experiments can detect all the cellular expressed sRNAs, including tRFs. However, distinguishing genuine tRFs from RNA fragments generated by random deg...
متن کاملHigh throughput sequencing reveals a plethora of small RNAs including tRNA derived fragments in Haloferax volcanii
To define the complete sRNA population of the halophilic archaeon Haloferax volcanii, we employed high throughput sequencing. cDNAs were generated from RNA ranging in size from 17 to 500 nucleotides isolated from cells grown at three different conditions to exponential and stationary phase, respectively. Altogether, 145 intergenic and 45 antisense sRNAs were identified. Comparison of the expres...
متن کاملpssRNAMiner: a plant short small RNA regulatory cascade analysis server
In plants, short RNAs including approximately 21-nt microRNA (miRNA) and 21-nt trans-acting siRNA (ta-siRNA) compose a 'miRNA --> ta-siRNA --> target gene' cascade pathway that regulates gene expression at the posttranscriptional level. In this cascade, biogenesis of ta-siRNA clusters requires 21-nt intervals (i.e. phasing) and miRNA (phase-initiator) cleavage sites on its TAS transcript. Here,...
متن کاملThe widespread occurrence of tRNA‐derived fragments in Saccharomyces cerevisiae
Short RNAs derived from the cleavage of tRNA molecules are observed in most organisms. Their occurrence seems to be induced by stress conditions, but still little is known about their biogenesis and functions. We find that the recovery of tRNA fragments depends on the RNA isolation method. Using an optimized RNA extraction protocol and northern blot hybridization technique, we show that the tRN...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Frontiers in Molecular Biosciences
سال: 2021
ISSN: ['2296-889X']
DOI: https://doi.org/10.3389/fmolb.2021.638911